Tags:

    M Oct 1:

    Microarrays & Sequencing for Gene Expression

    LECTURE SLIDES
    Download file "Expression-Overview_2012.ppt"

    REQUIRED READING:
    Download file "Oshlack_GenBiol_2010.pdf"
    Oshlack, Robinson, Young. (2010). From RNA-seq reads to differential expression results

    SUGGESTED READING:
    Trapnell et al. (2010) Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology 28,511–515
    Download file "Trapnell_Cufflinks_2010.pdf"

    Djebali et al. (2012). Landscape of Transcription in Human Cells. Nature. 489:101
    Download file "Gingeras_Nature_2012.pdf"

    LAB MATERIALS:
    Download file "R Intro Lab.zip"
    Intro to R & Bioconductor, Jean-Yves Svgro
    Download file "JYSgro_R-Bioconductor_2010.pdf"

    ** Homework Answers:
    Download file "Intro to R Gen 875 lab_2012_ANSWERS.doc"